PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477514.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 667aa    MW: 74214.7 Da    PI: 9.6104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07569617247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_016477514.1 569 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 617
                      56777799*****************9776668**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.52E-7359460IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.359563622IPR017930Myb domain
SMARTSM007173.5E-6567620IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-10568618IPR009057Homeodomain-like
SuperFamilySSF466893.3E-15569650IPR009057Homeodomain-like
CDDcd116601.80E-16569619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNK MCAFDLLTTV AGKLLLEGES  60
TPNSTNTVKE DEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DTLSGQASVI  120
TSSDCSEKLD SAERFINCES KNETRNCSTK VEQEASGFRH FSNCTLGAES KKQMKIDLSN  180
DAKIFGSDFP DLWDRKPTNL VVSDNTVKLS LSTDHVPFGS FPVIRNDVKL TNKDDDENYC  240
GCAQPSTRNK AFRPTPRVGN FRMRKLSDVN PKFEDADIET RHVYNRKNDY KSERSQRDFP  300
FKKRKLYYCN SFSDSDGGSS DRICSSPTKD LNRDAAGYSL ASSARAAVGT SISRGARTSS  360
DSHVKLKIKS FRVPELFVEI PENATVGSLK ACTSIIHLNK RTVMEAVTAI LGGGLHIGVV  420
FQGKKVRDDN KTLLQAGISH DDKLDALGFT LEPNPSRASS TLGPESHSRV LPCDTLQPLT  480
RGPPTPTVIC NGIRRGTYNA FSDHPETNLN NFIESDHDSA PSPPDASMEK DAADSRALVP  540
VAAVNAEALA AVPMRKPKRS DTAQRRIRRP FSVFEVEALV QAVEKLGTGR WRDVKMRAFD  600
NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLIAHGYWSQ KQAKQHMKHQ  660
SETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555556584107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295304QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-100HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792985.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009792987.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009792988.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009792989.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009792990.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016477513.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016477514.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016477515.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_016477516.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-133TRF-like 2